Englander Institute for Precision Medicine

Exome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function Mutations.

TitleExome Sequencing of African-American Prostate Cancer Reveals Loss-of-Function Mutations.
Publication TypeJournal Article
Year of Publication2017
AuthorsHuang FW, Mosquera JMiguel, Garofalo A, Oh C, Baco M, Amin-Mansour A, Rabasha B, Bahl S, Mullane SA, Robinson BD, Aldubayan S, Khani F, Karir B, Kim E, Chimene-Weiss J, Hofree M, Romanel A, Osborne JR, Kim JWook, Azabdaftari G, Woloszynska-Read A, Sfanos K, De Marzo AM, Demichelis F, Gabriel S, Van Allen EM, Mesirov J, Tamayo P, Rubin MA, Powell IJ, Garraway LA
JournalCancer Discov
Volume7
Issue9
Pagination973-983
Date Published2017 Sep
ISSN2159-8290
KeywordsAnimals, Black or African American, Cell Line, Tumor, Class I Phosphatidylinositol 3-Kinases, Exome, Exome Sequencing, Humans, Male, Mice, Mutation, Prostatic Neoplasms, PTEN Phosphohydrolase, Repressor Proteins
Abstract

African-American men have the highest incidence of and mortality from prostate cancer. Whether a biological basis exists for this disparity remains unclear. Exome sequencing ( = 102) and targeted validation ( = 90) of localized primary hormone-naïve prostate cancer in African-American men identified several gene mutations not previously observed in this context, including recurrent loss-of-function mutations in , an ETS transcriptional repressor, in 5% of cases. Analysis of existing prostate cancer cohorts revealed deletions in 3% of primary prostate cancers and mutations or deletions in in 3% to 5% of lethal castration-resistant prostate cancers. Knockdown of confers increased anchorage-independent growth and generates a gene expression signature associated with oncogenic ETS activation and androgen signaling. Together, these results suggest that is a prostate cancer tumor-suppressor gene. More generally, our findings support the application of systematic cancer genomic characterization in settings of broader ancestral diversity to enhance discovery and, eventually, therapeutic applications. Systematic genomic sequencing of prostate cancer in African-American men revealed new insights into prostate cancer, including the identification of as a prostate cancer gene; somatic copy-number alteration differences; and uncommon and alterations. This study highlights the importance of inclusion of underrepresented minorities in cancer sequencing studies. .

DOI10.1158/2159-8290.CD-16-0960
Alternate JournalCancer Discov
PubMed ID28515055
PubMed Central IDPMC5836784
Grant ListU54 CA137788 / CA / NCI NIH HHS / United States
U24 CA194107 / CA / NCI NIH HHS / United States
U01 CA162148 / CA / NCI NIH HHS / United States
U54 CA132378 / CA / NCI NIH HHS / United States
U01 CA176058 / CA / NCI NIH HHS / United States
R01 CA109467 / CA / NCI NIH HHS / United States
R01 CA121941 / CA / NCI NIH HHS / United States
U01 CA111275 / CA / NCI NIH HHS / United States
U54 HG003067 / HG / NHGRI NIH HHS / United States
P30 CA016056 / CA / NCI NIH HHS / United States
R01 CA116337 / CA / NCI NIH HHS / United States
R01 CA154480 / CA / NCI NIH HHS / United States

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