Englander Institute for Precision Medicine

Spatial omics technologies at multimodal and single cell/subcellular level.

TitleSpatial omics technologies at multimodal and single cell/subcellular level.
Publication TypeJournal Article
Year of Publication2022
AuthorsPark J, Kim J, Lewy T, Rice CM, Elemento O, Rendeiro AF, Mason CE
JournalGenome Biol
Volume23
Issue1
Pagination256
Date Published2022 Dec 13
ISSN1474-760X
KeywordsGenomics, Prospective Studies, Proteomics
Abstract

Spatial omics technologies enable a deeper understanding of cellular organizations and interactions within a tissue of interest. These assays can identify specific compartments or regions in a tissue with differential transcript or protein abundance, delineate their interactions, and complement other methods in defining cellular phenotypes. A variety of spatial methodologies are being developed and commercialized; however, these techniques differ in spatial resolution, multiplexing capability, scale/throughput, and coverage. Here, we review the current and prospective landscape of single cell to subcellular resolution spatial omics technologies and analysis tools to provide a comprehensive picture for both research and clinical applications.

DOI10.1186/s13059-022-02824-6
Alternate JournalGenome Biol
PubMed ID36514162
PubMed Central IDPMC9746133
Grant ListR01 MH117406 / MH / NIMH NIH HHS / United States
R01 AI158676 / AI / NIAID NIH HHS / United States
R01 AI161444 / AI / NIAID NIH HHS / United States
R01 AI151059 / AI / NIAID NIH HHS / United States
R01 CA249054 / CA / NCI NIH HHS / United States

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